Advertisement
CORRESPONDENCE|Articles in Press

Report of S100+ CD34+ spindle cell neoplasm with BRAF-KIAA1549 fusion in a metacarpal bone of an adult

Published:February 24, 2023DOI:https://doi.org/10.1016/j.pathol.2022.11.010
      To the Editor,
      Gene fusions causing activation of various protein kinases including NTRK1-3, BRAF, RAF1 and RET have been recently recognised in soft tissue tumours.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      • Antonescu C.R.
      • Dickson B.C.
      • Swanson D.
      • et al.
      Spindle cell tumors with RET gene fusions exhibit a morphologic spectrum similar to tumors with NTRK fusions.
      • Antonescu C.R.
      Emerging soft tissue tumors with kinase fusions: an overview of the recent literature with an emphasis on diagnostic criteria.
      The first large series described 25 spindle cell tumours with CD34 and S100 co-expression without SOX10 reactivity, showing recurrent fusions in RAF1, BRAF and NTRK1/2 genes.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      These tumours involved 15 adults and 10 children with soft tissue involved in 23 and bones in only two, in the mandible and maxilla, both in children. The histology of these kinase-fusion positive tumours shows a spectrum ranging from lipofibromatosis-like neural tumour, spindle cell tumours with CD34 and S100 reactivity resembling low grade malignant peripheral nerve sheath tumours (MPNST), and infantile fibrosarcoma (IFS) and IFS-like lesions.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      ,
      • Antonescu C.R.
      Emerging soft tissue tumors with kinase fusions: an overview of the recent literature with an emphasis on diagnostic criteria.
      The low grade lesions show low cellularity with bland spindle cells in a patternless or fascicular pattern, often with prominent stromal amianthoid and/or perivascular hyalinisation.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      ,
      • Antonescu C.R.
      Emerging soft tissue tumors with kinase fusions: an overview of the recent literature with an emphasis on diagnostic criteria.
      These tumours have minimal to mild atypia, very few or no mitotic figures and no necrosis. However, some of the tumours described by Suurmeijer et al. had mixed low and high grade areas.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      In 2020, those tumours showing lipofibromatosis-like neural tumour, either pure or in hybrid form with part of the tumour showing lipofibromatosis-like neural tumour, were separated out into a distinct entity.
      • Kao Y.-C.
      • Suurmeijer A.J.H.
      • Argani P.
      • et al.
      Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis-like neural tumor pattern.
      Of the 36 patients in that study, 94% were aged 30 years or less and most tumours involved extremities or trunk, usually located in the dermis or subcutis.
      • Kao Y.-C.
      • Suurmeijer A.J.H.
      • Argani P.
      • et al.
      Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis-like neural tumor pattern.
      Associated gene fusions were largely NTRK1 (75%) but also RET, NTRK2, NTRK3, ROS1, ALK and MET.
      • Kao Y.-C.
      • Suurmeijer A.J.H.
      • Argani P.
      • et al.
      Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis-like neural tumor pattern.
      We describe the first case of a CD34 and S100 co-expressing spindle cell tumour with a BRAF-KIAA1549 fusion arising in a bone of an adult. A 73-year-old female presented with a 4-year history of right third metacarpal swelling. X-ray and computed tomography (CT) scan revealed an expansile lesion in the metacarpal involving almost the entire span of the bone, with a degree of bone loss in the dorsum of the bone. Magnetic resonance imaging (MRI) demonstrated the lesion was a lobulated mass replacing the third metacarpal shaft and head, measuring 28×23×49 mm. It showed intermediate T1 weighted signal, heterogeneous T2 weighted signal, and homogeneous post-contrast enhancement. A lobular portion of the lesion projected distally from the most dorso-radial aspect into the dorsal interval between second and third metacarpophalangeal joints with surrounding musculature effacement. Thallium demonstrated intense early accumulation with moderate retention.
      The patient underwent CT core biopsy of the lesion, which identified it as a low grade spindle cell tumour with diffuse strong co-expression of S100 protein and CD34 (Fig. 1). SOX10 immunohistochemistry was negative. A KIAA1549-BRAF fusion was detected by Trusight RNA fusion panel (Illumina, USA). She then underwent surgical management via a third ray amputation. In the distal third of the metacarpal an expansile, solid, tan intramedullary lesion measuring 43×24×21 mm was identified. This lesion demonstrated extensive replacement of bone by a proliferation of spindle cells arranged in short fascicles with perivascular and stromal keloidal collagen similar to the core biopsy. Some of the tumour was low grade with no mitotic figures and low cellularity with strong uniform reactivity for CD34 and S100 protein (Fig. 1). Other areas showed high cellularity with four mitotic figures/mm2 (Fig. 2). Immunohistochemistry showed differential staining between the low and high grade areas with loss of S100 protein or both in the higher grade areas (Fig. 2). Some small immature chondroid islands and focal anaplasia were noted (Fig. 2). No necrosis was identified. The tumour infiltrated into the soft tissue beyond the bone. Margins were clear and no post-operative radiotherapy was administered. The patient is well without evidence of recurrence at 21 months.
      Fig. 1
      Fig. 1(A) Coronal CT: right third metacarpal shaft shows an expansile, lytic lesion. (B) MRI: Tumour arising in third metacarpal. Lobulated, heterogenous T2 weighted signal mass arising from third metacarpal, extending between second and fourth metacarpals. (C) High power of low grade areas showing small spindle cells with prominent amianthoid stromal and perivascular collagen (H&E). (D) High power showing diffuse strong reactivity for S100 protein. (E) High power showing diffuse strong reactivity for CD34.
      Fig. 2
      Fig. 2(A) Low power view of areas of high cellularity alternating with less cellular areas (H&E). (B) Low power of S100 showing areas of absent S100 in both the low and high cellularity foci. (C) Low power of CD34 showing areas of absent CD34. (D) High power of highly cellular mitotically active component. (E) High power of highly cellular component with anaplasia. (F) High power of immature chondroid elements.
      Table 1 summarises reported S100+ CD34+ SOX10– spindle cell tumours with kinase fusions which do not have lipofibromatosis-like neural tumour pattern, infantile fibrosarcoma/fibrosarcoma pattern or prominent myopericytoma/haemangiopericytic pattern
      • Kao Y.-C.
      • Suurmeijer A.J.H.
      • Argani P.
      • et al.
      Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis-like neural tumor pattern.
      • Haller F.
      • Knopf J.
      • Ackerman A.
      • et al.
      Paediatric and adult soft tissue sarcomas with NTRK1 gene fusions: a subset of spindle cell sarcomas unified by a myopericytic/haemangiopericytic pattern.
      • Suurmeijer A.J.
      • Dickson B.C.
      • Swanson D.
      • et al.
      The histologic spectrum of soft tissue spindle cell tumors with NTRK3 gene rearrangements.
      but are low to intermediate grade spindle cell tumour mimicking low grade MPNST.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      ,
      • Suurmeijer A.J.
      • Dickson B.C.
      • Swanson D.
      • et al.
      The histologic spectrum of soft tissue spindle cell tumors with NTRK3 gene rearrangements.
      • Mok Y.
      • Kimpo M.S.
      • Chen H.
      • et al.
      Spindle cell tumor with S100 and CD34 co-expression showing PDZRN3-RAF1 rearrangement – a recently described entity.
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      • Loong S.
      • Lian D.W.Q.
      • Kuick C.H.
      • et al.
      Novel TFG-RET fusion in a spindle cell tumour with S100 and CD34 coexpression.
      • Sheng S.-J.
      • Li J.-M.
      • Zou Y.-F.
      • et al.
      A low grade malignant soft tissue tumor with S100 and CD34 coexpression showing novel CDC42SE2-BRAF fusion with distinct features.
      • Lopez-Nunez O.
      • Surrey L.F.
      • Alaggio R.
      • et al.
      Novel PP1CB-ALK fusion in spindle cell tumor defined by S100 and CD34 coexpression and distinctive stromal and perivascular hyalinization.
      • Penning A.J.
      • Al-Ibraheemi A.
      • Michal M.
      • et al.
      Novel BRAF fusions and activating point mutations in spindle cell sarcomas with histologic overlap with infantile fibrosarcoma.
      Of 28 patients, there were equal numbers of males and females. Fifty percent were aged less than 30 years and 50% were older adults ranging from 35 to 77 years. Soft tissues were involved in 23/28 (82%), bones in 3/28 (11%) and viscera in 2/28 (7%). Sites affected included extremities in 15 (54%), trunk in eight (29%), head and neck in three (11%) and viscera in two (7%). Follow-up was available in 15 patients. Three (20%) died of or with disease at 25–375 months.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      ,
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      Three (20%) were alive with disease at 27–60 months. Eight (53%) have no evidence of disease at 9–248 months. Two older adults (13%) had documented visceral metastases.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      ,
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      Table 1Reported cases of S100+ CD34+ spindle cell tumours with protein kinase fusions excluding lipofibromatosis-like neural tumours, tumours with infantile fibrosarcoma/fibrosarcoma-like pattern and myopericytic pattern
      Case(ref)Age (years)/sexLocationSize (cm)Gene fusion/rearrangementCellularityFollow-up
      11F 67Abdomen15PDZNR3-RAF1ICAWD (7 mo); lung, liver peritoneal metastases
      21M 41ThighNASLMAP-RAF1LCNA
      31F 2RectumNATMF1-RAF1LCNA
      41F 45BackNARAF1LCNED (36 mo)
      51M 10ThighNARAF1LCNA
      61F 38ShoulderNARAF1ICNED (9 mo)
      71F 27BackNARAF1LCNED (26 mo)
      81M 59Chest wallNARAF1ICNED (25 mo); surgery and RT
      91F 48HandNABRAFLCAWD (22 mo); persistent local disease
      101F 18ThighNABRAFICNA
      111M 13MaxillaNALMNA-NTRK1LCNED (648 mo)
      121M 4MandibleNALMNA-NTRK1LCNED (144 mo); surgery and RT
      131F 16Chest wallNALMNA-NTRK1ICNA
      141F 63Lower legNALMNA-NTRK1ICDOO (375 mo); lung metastases
      151M 18StomachNALMNA-NTRK1ICDOD (25 mo)
      161F 15ThighNALMNA-NTRK1LCNA
      171M 38WristNATPM3-NTRK1LCNED (16 mo)
      181M 35Chest wallNATPM3-NTRK1LCNA
      191F 17Chest wallNANTRK1LCNA
      201M 3ShoulderNANTRK1LCNA
      217M 4Thigh, IM6PDZRN3-RAF1ICNA
      228F 55Chest wall>6KIAA1549-BRAFICDWD (time NA) after CT, targeted therapy
      Targeted therapy included bevacizumab, temsirolimus and sorafenib.
      239M 3 (congenital)Thigh4TFG-RETICNA
      2410M 52Forearm, IM focally into bone7.6CDC42SE2-BRAFICLR at 19 mo after intracapsular surgery; no response to crizotinib; amputation, then lost to follow-up
      2511M 47Shoulder, IM12PPP1CB-ALKLCNA
      2612 (Case6)M congenitalScalpNAEPB41L2-BRAFNAAWD (60 mo)
      276 (Case1)F 67Thigh4ETV6-NTRK3ICNA
      28
      Current case.
      F 73Metacarpal4.3KIAA1549-BRAFICNED (21 mo)
      AWD, alive with disease; CT, chemotherapy; DOD, died of disease; DOO, died other causes; DWD, died with disease; F, female; IC, increased cellularity; IM, intramuscular; LC, low cellularity; LR, local recurrence; M, male; mo, months; NA, not available; NED, no evidence of disease; RT, radiotherapy; SC, subcutis.
      a Targeted therapy included bevacizumab, temsirolimus and sorafenib.
      b Current case.
      Recognition of this group of spindle cell tumours in soft tissue and bone by the unusual S100+ CD34+ S0X10– immunohistochemical profile is important so that investigation by an RNA fusion panel can be performed to look for BRAF, RAF1, RET, NTRK1-3, MET, ROS1 and ALK fusions. If these fusions are identified, there is potential for using specific kinase inhibitors such as BRAF and MEK inhibitors, NTRK inhibitors (entrectinib and larotrectinib), and crizotinib for ALK fusions. Efficacy has been demonstrated for these in soft tissue malignancies.
      • Antonescu C.R.
      Emerging soft tissue tumors with kinase fusions: an overview of the recent literature with an emphasis on diagnostic criteria.
      ,
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      Some response has been reported in a high grade CD34+ S100+ spindle cell sarcoma with a KIAA1549-BRAF fusion to the combination targeted therapy comprising bevacizumab, temsirolimus and sorafenib.
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      Sorafenib is a protein kinase inhibitor with activity against many protein kinases, including VEGFR, PDGFR and RAF kinases.
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      Temsirolimus was included to inhibit the downstream mTOR pathway.
      • Subbiah V.
      • Westin S.N.
      • Wang K.
      • et al.
      Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
      The finding of negative reactivity for SOX10 is critical to exclude a low grade MPNST which can mimic this group of tumours. However, MPNST often shows loss of H3K27me and there is often associated neurofibroma, history or concurrent diagnosis of NF1 or intimate association with a peripheral nerve on imaging or at surgery.
      The low grade cytology, low or absent mitotic activity and lack of necrosis in this group of CD34+ S100+ SOX10– spindle cell tumours may suggest a benign neoplasm, but even the low grade lesions have infiltrative margins so that wide local excision is recommended. A reported case of a 4-year-old boy with a tumour with low grade morphology in the mandible showed local recurrence which was treated with surgery and radiotherapy with no evidence of disease at 12 years follow-up.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      Although there are some common morphological features to this group of spindle cell tumours, such as bland spindle cells with fascicular or patternless pattern and prominent stromal and perivascular hyalinisation, it is worth noting that some tumours like ours may appear low grade on initial core biopsies but harbour higher grade sarcomatous areas on resection with marked cellularity and mitotic activity. Focal heterologous immature chondroid matrix similar to our case was noted in one of the cases with sarcomatous areas in the series of Suurmeijer et al.
      • Suurmeijer A.J.H.
      • Dickson B.C.
      • Swanson D.
      • et al.
      A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
      Although the typical immunophenotype includes diffuse S100 and CD34 reactivity, spindle cell tumours with similar histology and RAF1 fusions may show patchy or focal reactivity for one of these markers.
      • Penning A.J.
      • Al-Ibraheemi A.
      • Michal M.
      • et al.
      Novel BRAF fusions and activating point mutations in spindle cell sarcomas with histologic overlap with infantile fibrosarcoma.
      In conclusion, we have presented the first case of an S100+ CD34+ SOX10– spindle cell tumour with KIAA1549-BRAF fusion occurring in a bone (metacarpal) in an adult. Although initial histology of the core biopsies showed a low grade spindle cell tumour with patternless pattern and typical stromal and perivascular hyalinisation, the resection showed a biphasic tumour with foci of high cellularity and focal chondroid matrix. The immunohistochemical pattern also varied with the grade. There is a morphological spectrum ranging from low grade lipofibromatosis-like neural tumour to high grade sarcoma and there can be tumours similar to our case with both low and high grade morphology and increased mitotic activity. It is important to recognise them and treat appropriately, with consideration of targeted therapy with specific kinase inhibitors in advanced local or metastatic disease.

      Conflicts of interest and sources of funding

      The authors state that there are no conflicts of interest to disclose.

      References

        • Suurmeijer A.J.H.
        • Dickson B.C.
        • Swanson D.
        • et al.
        A novel group of spindle cell tumors defined by S100 and CD34 co-expresion shows recurrent fusions involving RAF1, BRAF, and NTRK1/2 genes.
        Genes Chromosomes Cancer. 2018; 57: 611-612
        • Antonescu C.R.
        • Dickson B.C.
        • Swanson D.
        • et al.
        Spindle cell tumors with RET gene fusions exhibit a morphologic spectrum similar to tumors with NTRK fusions.
        Am J Surg Pathol. 2019; 43: 1384-1391
        • Antonescu C.R.
        Emerging soft tissue tumors with kinase fusions: an overview of the recent literature with an emphasis on diagnostic criteria.
        Genes Chromosomes Cancer. 2020; 59: 437-444
        • Kao Y.-C.
        • Suurmeijer A.J.H.
        • Argani P.
        • et al.
        Soft tissue tumors characterized by a wide spectrum of kinase fusions share a lipofibromatosis-like neural tumor pattern.
        Genes Chromosome Cancer. 2020; 59: 575-583
        • Haller F.
        • Knopf J.
        • Ackerman A.
        • et al.
        Paediatric and adult soft tissue sarcomas with NTRK1 gene fusions: a subset of spindle cell sarcomas unified by a myopericytic/haemangiopericytic pattern.
        J Pathol. 2016; 238: 700-710
        • Suurmeijer A.J.
        • Dickson B.C.
        • Swanson D.
        • et al.
        The histologic spectrum of soft tissue spindle cell tumors with NTRK3 gene rearrangements.
        Genes Chromosome Cancer. 2019; 58: 739-746
        • Mok Y.
        • Kimpo M.S.
        • Chen H.
        • et al.
        Spindle cell tumor with S100 and CD34 co-expression showing PDZRN3-RAF1 rearrangement – a recently described entity.
        Histopathology. 2019; 74: 1109-1111
        • Subbiah V.
        • Westin S.N.
        • Wang K.
        • et al.
        Targeted therapy by combined inhibition of the RAF and mTOR kinases in malignant spindle cell neoplasm harbouring the KIAA1549-BRAF fusion protein.
        J Haematol Oncol. 2014; 7: 8
        • Loong S.
        • Lian D.W.Q.
        • Kuick C.H.
        • et al.
        Novel TFG-RET fusion in a spindle cell tumour with S100 and CD34 coexpression.
        Histopathology. 2020; 76: 333-338
        • Sheng S.-J.
        • Li J.-M.
        • Zou Y.-F.
        • et al.
        A low grade malignant soft tissue tumor with S100 and CD34 coexpression showing novel CDC42SE2-BRAF fusion with distinct features.
        Genes Chromosome Cancer. 2020; 59: 595-600
        • Lopez-Nunez O.
        • Surrey L.F.
        • Alaggio R.
        • et al.
        Novel PP1CB-ALK fusion in spindle cell tumor defined by S100 and CD34 coexpression and distinctive stromal and perivascular hyalinization.
        Genes Chromosome Cancer. 2020; 59: 495-499
        • Penning A.J.
        • Al-Ibraheemi A.
        • Michal M.
        • et al.
        Novel BRAF fusions and activating point mutations in spindle cell sarcomas with histologic overlap with infantile fibrosarcoma.
        Mod Pathol. 2021; 34: 1530-1540